2022

• Constance Vennin, Charlotte Hewel, Hristo Todorov, Marlon Wendelmuth, Konstantin Radyushkin, Andre Heimbach, Illia Horenko, Sarah Ayash, Marianne Müller, Susann Schweiger, Susanne Gerber and Beat Lutz. A Resilience-Related Glial-Neurovascular Network Is Transcriptionally Activated after Chronic Social Defeat in Male Mice. MDPI Cells, 11(21), 3405; doi.org/10.3390/cells11213405 (2022)

• Sys, S., Weißbach, S., Jakob, L., Gerber, S., & Schneider, C. (2022). CollembolAI, a macrophotography and computer vision workflow to digitize and characterize samples of soil invertebrate communities preserved in fluid. Methods in Ecology and Evolution, 00, 1– 14.https://doi.org/10.1111/2041-210X.14001
• Leonie Frommherz, Katalin Komlosi, Charlotte Hewel, Julia Kopp, Malin Dewenter, Andreas Zimmer, Oliver Bartsch, Matthias Linke, Kristin Technau-Hafsi, Susanne Gerber, Judith Fischer and Cristina Has: Acral ichthyosis associated with amino acid substitution in the C-terminus of keratin 2. Accepted for publication in Journal of European Academy of Dermatology Venereology (2022)
• Illia Horenko*, Lukáš Pospíšil, Edoardo Vecchi, Steffen Albrecht, Alexander Gerber, Beate Rehbock, Albrecht Stroh and Susanne Gerber*: Low-Cost Probabilistic 3D Denoising with Applications for Ultra-Low-Radiation Computed Tomography.  Journal of Imaging, 8(6),156; doi.org/10.3390/jimaging8060156 (2022)
• Nicolas Ruffini*, Susanne Klingenberg*, Raoul Heese, Susann Schweiger and Susanne Gerber: The big picture of Neurodegeneration: A Meta Study to Extract the Essential Evidence on Neurodegenerative Diseases in a Network-Based Approach. Frontiers in Aging Neuroscience. doi.org/10.3389/fnagi.2022.866886 (2022).
• Malena dos Santos Guilherme, TheodoraTsoutsouli, Monika Chanu Chongtham, Jennifer Winter Susanne Gerber, Marianne Müller, Kristina Endres: Selective targeting of chronic social stress-induced activated neurons identifies neurogenesis-related genes to be associated with resilience in female mice. Psychoneuroendocrinology (2022)
• Susanne Gerber*, Lucas Pospisil, Stanislav Sys, Charlotte Hewel, Ali Torkamani and Illia Horenko*: Co-inference of data mislabeling reveals improved models in genomics and breast cancer diagnostics, Frontiers in Artificial Intelligence, 4 (193 )doi.org/10.3389/frai.2021.739432, (2022)

2021

• Nicolas Ruffini, Marianne Müller, Ulrich Schmitt and Susanne Gerber:  IntelliPy: A GUI for analyzing IntelliCage data. Bioinformatics, doi.org/10.1093/bioinformatics/btab682 (2021)
• Henning Formes, Joanna Pimenta Bernardes, Amrit Mann, Franziska Bayer, Giulia Pontarollo, Klytaimnistra Kiouptsi, Katrin Schäfer, Sebastian Attig, Teodora Nikolova, Thomas Hofmann, Jörn Schattenberg, Hristo Todorov, Susanne Gerber, Philip Rosenstiel, Tobias Bopp, Felix Sommer and  Christoph Reinhardt: The gut microbiota instructs the hepatic endothelial cell transcriptom.  iScience, 24 (10), (2021)
• Diego Pascual Cuadrado, Hristo Todorov, Raissa Lerner, Larglinda Islami, Laura Bindila, Susanne Gerber, Beat Lutz: Long-term molecular differences between resilient and susceptible mice after a single traumatic exposure. British Journal of Pharmacology, doi.org/10.1111/bph.15697 (2021)
• Malena dos Santos Guilherme, Theodora Tsoutsouli, Hristo Todorov, Sina Teifel, Susanne Gerber* and Kristina Endres*. N6-methyladenosine modification in chronic stress response due to social hierarchy positioning of mice. Frontiers in Cell and Developmental Biology, 9:705986. doi: 10.3389/fcell.2021.705986 (2021)
• Martin Schüle, Tamer Butto, Sri Dewi, Susanne Strand, Susanne Gerber, Kristina Endres, Susann Schweiger, Jennifer Winter. mTOR inhibition in primary neurons and the developing brain represses transcription of cholesterol biosynthesis genes and alters cholesterol levels. Int. J. Mol. Sci. 22 (11), 6034,(2021).
• Markus Pfenninger, Friederike Reuss, Angelika Kiebler, Philipp Schönnenbeck, Cosima Caliendo, Susanne Gerber, Berardino Cocchiararo, Sabrina Reuter, Nico Blüthgen, Karsten Mody, Bagdevi Mishra, Miklós Bálint, Marco Thines, Barbara Feldmeyer. Genomic basis of drought resistance in Fagus sylvatica.  eLife, 10:e65532 (2021).
• Monika Chongtham, Tamer Butto, Kanak Mungikar, Susanne Gerber and Jennifer Winter: INTACT vs. FANS for cell-type-specific nuclei isolation: A comprehensive qualitative and quantitative comparison, International Journal of Molecular Sciences (IJMS), (2021).
• Diego Pascual Cuadrado, Anna Wierczeiko, Charlotte Hewel, Susanne Gerber and Beat Lutz: Dichotomic hippocampal transcriptome after glutamatergic versus GABAergic deletion of the cannabinoid CB1 receptor, Frontiers In Synaptic Neuroscience, doi: 10.3389/fnsyn.2021.660718 (2021).

• Mohit Navandar, Elena Martín-García, Rafael Maldonado, Beat Lutz, Susanne Gerber^#, Inigo Ruiz de Azua^#: Transcriptional signatures in prefrontal cortex confer vulnerability versus resilience to food and cocaine addiction-like behavior. Scientific Reports, 11 (2021)

• Niels Lemmermann,  Bettina Lieb, Tilmann Laufs, Angelique Renzaho, Stefan Runkel, Wolfgang Kohnen,  Mathias Linke, Susanne Gerber, Susann Schweiger, Andre Michel, Sven-Erno Bikar, Bodo Plachter, Thomas Hankeln. SARS-CoV-2 genome surveillance in Mainz, Germany, reveals convergent origin of the N501Y spike mutation in a hospital setting. medRxiv 2021.02.11.21251324; doi: doi.org/10.1101/2021.02.11.21251324 (2021).
• Anna Wierczeiko, Lena Gammel, Konstantin Radyushkin, Vu Thu Thuy Nguyen  Hristo Todorov, Susanne Gerber*, Kristina Endres*. Voluntary Wheel Running Did Not Alter Gene Expression in 5xFAD Mice, but in Wild-Type Animals Exclusively After One-Day Exercise Bout, Cells 10(3), 693; doi.org/10.3390/cells10030693 (2021).
• Davi Rodrigues, Karin Everschor-Sitte, Susanne Gerber and Illia Horenko. A deeper look into natural sciences with physics-based and data-driven measures. iScience Volume 24 (Issue 3), doi.org/10.1016/j.isci.2021.102171 (2021).
• Stephan Weißbach, Stanislav Sys, Charlotte Hewel, Hristo Todorov, Susann Schweiger, Jennifer Winter, Markus Pfenninger, Ali Torkamani, Doug Evans, Joachim Burger Karin Everschor-Sitte, Helen May-Simera and Susanne Gerber. Reliability of genomic variants across different next-generation sequencing platforms and bioinformatic processing pipelines.  BMC Genomics 22, 62 (2021).

2020

• Nicolas Ruffini, Susanne Klingenberg, Susann Schweiger and Susanne Gerber. Common Factors in Neurodegeneration: A Meta-Study revealing Shared Patterns on a Multi-Omics Scale, Cells 9(12), 2642, https://doi.org/10.3390/cells9122642, (2020)
• Monika Chongtham, Hristo Todorov, J.E. Wettschereck, Susanne Gerber and Jennifer Winter. Isolation of nuclei and downstream processing of cell-type-specific nuclei from micro-dissected mouse brain regions – techniques and caveats. bioRxiv, doi: doi.org/10.1101/2020.11.18.374223 (2020)
• Susanne Gerber, Lukas Pospisil, Mohit Navandar and Illia Horenko:Low-cost scalable discretization, prediction and feature selection for complex systems, Science Advances, Vol. 6, no. 5, eaaw0961 DOI: 10.1126/sciadv.aaw0961 (2020).
• Laura Domingo-Rodriguez, Inigo Ruiz de Azua, Eduardo Dominguez, Eric Senabre, Irene Serra,Sami Kummer, Mohit Navandar, Sarah Baddenhausen, Clementine Hofmann, Raul Andero, Susanne Gerber, Marta Navarrete, Mara Dierssen, Beat Lutz, Elena Martín-García & Rafael Maldonado: A specific prelimbic-nucleus accumbens pathway controls resilience versus vulnerability to food addiction. Nature Communications 11, 782 (2020). https://doi.org/10.1038/s41467-020-14458-y
• Caroline Fischer, Heiko Endle, Lana Schumann, Annett Wilken-Schmitz, Julia Kaiser, Susanne Gerber, Christina F. Vogelaar, Mirko H.H. Schmidt, Robert Nitsch, Isabel Snodgrass, Dominique Thomas, Johannes Vogt, Irmgard Tegeder. Prevention of age-associated neuronal hyperexcitability with improved learning and attention upon knockout or antagonism of LPAR2. Cellular and Molecular Life Sciences doi.org/10.1007/s00018-020-03553-4 (2020).
• Klytaimnistra Kiouptsi, Giulia Pontarollo, Hristo Todorov, Johannes Braun, Sven Jäckel, Thomas Koeck, Franziska Bayer, Cornelia Karwot, Angelica Karpi, Susanne Gerber, Yvonne Jansen, Philipp Wild, Wolfram Ruf, Andreas Daiber, Emiel van der Vorst, Christian Weber, Yvonne Döring, Christoph Reinhardt. Germ-free housing conditions do not affect aortic root and aortic arch lesion size of late atherosclerotic low-density lipoprotein receptor-deficient mice.  Gut Microbes www.tandfonline.com/doi/full/10.1080/19490976.2020.1767463 (2020).
• Malena dos Santos Guilherme, Hristo Todorov, Carina Osterhof, Anton Möllerke, Kristina Cub, Thomas Hankeln, Susanne Gerber, Kristina Endres: Impact of acute and chronic amyloid-β peptide exposure on gut microbial commensals in the mouse.  Frontiers in Microbiology 11:1008. doi: 10.3389/fmicb.2020.01008 (2020).
• Hristo Todorov, Emily Searle-White and Susanne Gerber. Applying univariate vs. multivariate statistics to investigate therapeutic efficacy in (pre)clinical trials: A Monte Carlo simulation study on the example of a controlled preclinical neurotrauma trial. PLOS ONE, 15(3): e0230798; doi.org/10.1371/journal.pone.0230798 (2020).
• Hristo Todorov, Bettina Kollar, Franziska Bayer, Inês Brandão, Amrit Mann, Julia Mohr, Giulia Pontarollo, Henning Formes, Roland Stauber, Jens M. Kittner, Kristina Endres, Bernhard Watzer, Wolfgang Andreas Nockher, Felix Sommer, Susanne Gerber and Christoph Reinhardt. Alpha-Linolenic Acid-Rich Diet Influences Microbiota Composition and Villus Morphology of the Mouse Small Intestine. Nutrients. 12, 732; doi:10.3390/nu12030732. (2020).
• Marlon Wendelmuth, Michael Willam, Hristo Todorov, Konstantin Radyushkin, Susanne Gerber and Susann Schweiger. Dynamic longitudinal behavior in animals exposed to chronic social defeat stress.  PLOS ONE. 15(7): e0235268 (2020).

2019

• Klytaimnistra Kiouptsi, Sven Jäckel, Giulia Pontarollo, Alexandra Grill, Marijke Kuijpers, Eivor Wilms, Christian Weber, Felix Sommer, Magdolna Nagy, Carlos Neideck, Yvonne Jansen, Stefanie Ascher, Henning Formes, Cornelia Karwot, Franziska Bayer, Bettina Kollar, Saravanan Subramaniam, Michael Molitor, Philip Wenzel, Philip Rosenstiel, Hristo Todorov, Susanne Gerber, Ulrich Walter, Kerstin Jurk, Johan Heemskerk, Emiel van der Vorst, Yvonne Döring, and Christoph Reinhardt: The microbiota promotes arterial thrombosis in low-density lipoprotein receptor-deficient mice. mBio, 10 (5) e02298-19; DOI: 10.1128/mBio.02298-19 (2019).
• Charlotte Hewel, Julia Kaiser, Anna Wierczeiko, Jan Linke, Christoph Reinhardt, Kristina Endres and Susanne Gerber: Common miRNA patterns of Alzheimers disease and Parkinsons disease and their putative impact on commensal gut microbiota. Frontiers in Neuroscience, doi: 10.3389/fnins.2019.00113  (2019)

2018

• Susanne Gerber, Simon Olsson, Frank Noe and Illia Horenko: A scalable approach to the computation of invariant measures for high-dimensional Markovian systems. Nature Scientific Reports, 8,  Article number: 1796, doi:10.1038/s41598-018-19863-4 (2018)
• Hristo Todorov, David Fournierand Susanne Gerber: Principal components analysis: theory and application to gene expression data analysis, Genomics and Computational Biology,  4(2) p. e100041, jan. 2018. ISSN 2365-7154 (2018)
• Anna Wierczeiko, David Fournier, Hristo Todorov, Susanne Klingenberg, Kristina Endres and Susanne Gerber: Decoupling of DNA methylation status and gene expression levels in aging individuals,  Genomics and Computational Biology, 4(2) p.e100040, jan. 2018. ISSN 2365-7154 (2018).
• Stanislav J. Sys, David Fournier, Illia Horenko, Kristina Endres and Susanne Gerber: Dynamics of SNP associations in relation to Alzheimer’s Disease captured with a new measure of linkage disequilibrium. Genomics and Computational Biology, 4(2) p. e100045, jan. 2018. ISSN 2365-7154 (2018).

2017-2014

• Susanne Gerber and Illia Horenko: Towards a direct and scalable identification of reduced models for categorical processes, Proceedings of the National Academy of Sciences of the United States of America - (PNAS),114 (19) 4863-4868,doi:10.1073/pnas.1612619114 (2017).
• Susanne Gerber, Martina Fröhlich, Hella Lichtenberg-Fraté, Sergey Shabala, Lana Shabala and Edda Klipp:  A Thermodynamic Model of Monovalent Cation Homeostasis in the Yeast Saccharomyces cerevisiae PLoS Comput. Biol. 12 (1), e1004703. doi: 10.1371/journal.pcbi.1004703, PMID: 26815455  (2016).
• Susanne Gerber and Illia Horenko:  Improving clustering by imposing network information. Science Advances 1(7), e1500163; DOI: 10.1126/sciadv.1500163  (2015).
• Susanne Gerber and Illia Horenko: On inference of causality for discrete state models in multiscale context.  Proceedings of the National Academy of Sciences of the United States of America -  111 (41) 14651-14656, doi:10.1073/pnas.1410404111,(2014).

Full list of publications:

https://csg.uni-mainz.de/publications/